STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGRI_095300Pyridoxal phosphate-dependent transferase, major region, subdomain 2. (346 aa)    
Predicted Functional Partners:
PGRI_067220
Malate dehydrogenase, type 1; Belongs to the LDH/MDH superfamily.
   
 0.962
PGRI_087400
Malate dehydrogenase.
   
 0.962
PGRI_004040
Aspartate aminotransferase.
  
 
0.956
PGRI_075180
Aspartate aminotransferase.
  
 
0.956
PGRI_075160
Fumarate lyase.
   
 0.948
PGRI_065810
NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.942
PGRI_085400
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.942
PGRI_047360
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
 0.940
PGRI_063040
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.933
PGRI_069590
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.933
Your Current Organism:
Penicillium griseofulvum
NCBI taxonomy Id: 5078
Other names: CBS 185.27, P. griseofulvum, Penicillium patulum
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