STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0033PFAM: dienelactone hydrolase; KEGG: ccs:CCNA_00037 esterase lipase family protein. (261 aa)    
Predicted Functional Partners:
Cseg_0031
KEGG: ccs:CCNA_00039 hypothetical protein.
       0.606
Cseg_0032
KEGG: ccs:CCNA_00038 hypothetical protein.
       0.601
Cseg_0714
PFAM: aminoglycoside phosphotransferase; KEGG: ccs:CCNA_00968 gluconate kinase.
  
  
 0.535
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.520
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.520
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.498
Cseg_1121
PFAM: FAD dependent oxidoreductase; KEGG: ccs:CCNA_02652 cyclohexanone monooxygenase.
 
    0.483
Cseg_1648
PFAM: thiamine biosynthesis Thi4 protein; KEGG: ccs:CCNA_01410 cyclohexanone monooxygenase.
 
    0.438
Cseg_1476
KEGG: ccs:CCNA_01290 hypothetical protein.
  
     0.412
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.