STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0096Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: gem:GM21_1016 putative transcriptional regulator. (384 aa)    
Predicted Functional Partners:
Cseg_0097
KEGG: ccs:CCNA_00098 hypothetical protein.
       0.718
Cseg_0098
PFAM: Heparinase II/III family protein; KEGG: ccs:CCNA_00099 cytosolic protein.
       0.718
Cseg_0099
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: cak:Caul_4780 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.718
Cseg_2547
KEGG: ara:Arad_4112 chromosome partition protein.
  
    0.711
Cseg_0100
Sun protein; KEGG: ccs:CCNA_00101 16S rRNA m5C methyltransferase RsmB; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.515
Cseg_2967
PFAM: integrase family protein; KEGG: mno:Mnod_5804 integrase family protein.
 
     0.481
Cseg_0101
KEGG: cak:Caul_4778 putative signal peptide protein.
       0.410
Cseg_1925
KEGG: cak:Caul_2903 hypothetical protein.
   
    0.405
Cseg_2065
KEGG: ccs:CCNA_00644 hypothetical protein.
   
    0.405
Cseg_2105
KEGG: gsu:GSU0801 hypothetical protein.
   
    0.405
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.