Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cseg_0105 | Cseg_0106 | Cseg_0105 | Cseg_0106 | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | KEGG: ccs:CCNA_00106 2-polyprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase. | 0.627 |
Cseg_0105 | Cseg_3491 | Cseg_0105 | Cseg_3491 | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | PFAM: MscS Mechanosensitive ion channel; KEGG: ccs:CCNA_03095 mechanosensitive ion channel. | 0.579 |
Cseg_0105 | Cseg_4092 | Cseg_0105 | Cseg_4092 | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein. | 0.423 |
Cseg_0105 | pyrF | Cseg_0105 | Cseg_0104 | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.574 |
Cseg_0106 | Cseg_0105 | Cseg_0106 | Cseg_0105 | KEGG: ccs:CCNA_00106 2-polyprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase. | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | 0.627 |
Cseg_0106 | pyrF | Cseg_0106 | Cseg_0104 | KEGG: ccs:CCNA_00106 2-polyprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.460 |
Cseg_3491 | Cseg_0105 | Cseg_3491 | Cseg_0105 | PFAM: MscS Mechanosensitive ion channel; KEGG: ccs:CCNA_03095 mechanosensitive ion channel. | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | 0.579 |
Cseg_4092 | Cseg_0105 | Cseg_4092 | Cseg_0105 | KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein. | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | 0.423 |
pyrF | Cseg_0105 | Cseg_0104 | Cseg_0105 | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_00105 MarC family integral membrane protein. | 0.574 |
pyrF | Cseg_0106 | Cseg_0104 | Cseg_0106 | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | KEGG: ccs:CCNA_00106 2-polyprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase. | 0.460 |