STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0111KEGG: ccs:CCNA_00111 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Cseg_1311
PFAM: endodeoxyribonuclease RusA; KEGG: ccs:CCNA_02192 hypothetical protein.
  
     0.738
Cseg_1925
KEGG: cak:Caul_2903 hypothetical protein.
  
     0.735
Cseg_1359
PFAM: Phosphoglycerate mutase; KEGG: ccs:CCNA_02152 phosphoglycerate mutase.
  
     0.724
Cseg_0332
KEGG: cak:Caul_4390 hypothetical protein.
  
     0.712
Cseg_0110
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ccs:CCNA_00110 DNA-binding protein.
 
     0.664
Cseg_3347
PFAM: Protein of unknown function DUF2336; KEGG: ccs:CCNA_00997 hypothetical protein.
  
     0.662
Cseg_4009
KEGG: ccs:CCNA_00148 hypothetical protein.
  
     0.661
Cseg_4021
KEGG: ccs:CCNA_00135 endopeptidase DegP.
  
     0.658
Cseg_0553
KEGG: ccs:CCNA_00519 hypothetical protein.
  
     0.654
Cseg_4042
PFAM: diacylglycerol kinase catalytic region; KEGG: ccs:CCNA_03670 diacylglycerol kinase catalytic region.
  
     0.613
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.