STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0116PFAM: amino acid permease-associated region; KEGG: sen:SACE_5198 amino acid permease-associated region. (465 aa)    
Predicted Functional Partners:
Cseg_2939
Manually curated; PFAM: alpha amylase catalytic region; KEGG: ccs:CCNA_02368 alpha-glucosidase; SMART: alpha amylase catalytic sub domain.
   
 0.777
Cseg_2940
KEGG: ccs:CCNA_02369 alpha-amylase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
   
 0.777
Cseg_0117
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: cak:Caul_4615 cyclopropane-fatty-acyl-phospholipid synthase.
 
  
 0.670
Cseg_4092
KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.457
Cseg_0118
PFAM: protein of unknown function UPF0066; KEGG: ccs:CCNA_00119 putative transcriptional regulator.
       0.447
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.