STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0119KEGG: ccs:CCNA_00121 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Cseg_3318
PFAM: peptidase M14 carboxypeptidase A; KEGG: ccs:CCNA_01036 hypothetical protein.
  
     0.696
Cseg_3859
KEGG: ccs:CCNA_00298 hypothetical protein.
  
     0.682
Cseg_2648
Amidohydrolase; KEGG: ccs:CCNA_01625 aminobenzoyl-glutamate utilization protein B; TIGRFAM: amidohydrolase; PFAM: peptidase dimerisation domain protein.
  
     0.668
Cseg_0479
KEGG: ccs:CCNA_03467 hypothetical protein.
  
     0.620
Cseg_0120
PFAM: protein of unknown function DUF1232; KEGG: ccs:CCNA_00122 hypothetical protein.
       0.599
Cseg_0904
PFAM: peptidase S41; KEGG: ccs:CCNA_00686 peptidase family S41 protein.
  
     0.548
Cseg_3395
PFAM: peptidase M28; KEGG: ccs:CCNA_00933 hypothetical protein.
  
     0.530
Cseg_3086
KEGG: ccs:CCNA_03073 hypothetical protein.
  
     0.525
Cseg_0739
KEGG: ccs:CCNA_00534 hypothetical protein.
  
     0.476
Cseg_3174
KEGG: cak:Caul_1534 hypothetical protein.
  
     0.471
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.