STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0120PFAM: protein of unknown function DUF1232; KEGG: ccs:CCNA_00122 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Cseg_0119
KEGG: ccs:CCNA_00121 hypothetical protein.
       0.599
Cseg_0121
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_00123 3-hydroxyacyl CoA dehydrogenase.
       0.571
Cseg_4258
PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: ccs:CCNA_03846 hypothetical protein.
  
     0.502
Cseg_0098
PFAM: Heparinase II/III family protein; KEGG: ccs:CCNA_00099 cytosolic protein.
  
     0.471
Cseg_2790
PFAM: NUDIX hydrolase; KEGG: ccs:CCNA_02541 phosphohydrolase (MutT/NUDIX family protein).
 
     0.460
Cseg_2001
KEGG: mrd:Mrad2831_3990 hypothetical protein.
  
     0.421
Cseg_1885
PFAM: Cbb3-type cytochrome oxidase component; KEGG: ccs:CCNA_01469 cytochrome cbb3 oxidase, subunit CcoQ.
  
     0.413
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.