STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0130PFAM: flavodoxin/nitric oxide synthase; KEGG: cak:Caul_4769 flavodoxin/nitric oxide synthase. (204 aa)    
Predicted Functional Partners:
Cseg_1951
Flavoprotein WrbA; KEGG: ccs:CCNA_00833 Trp repressor binding protein; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase.
  
  
 
0.927
Cseg_0327
PFAM: NmrA family protein; KEGG: ccs:CCNA_03480 hypothetical protein.
    
  0.901
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
Cseg_4231
KEGG: ccs:CCNA_03873 hypothetical protein.
   
  
 0.629
Cseg_0918
PFAM: Ferritin Dps family protein; KEGG: ccs:CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase; Belongs to the Dps family.
  
  
 0.623
Cseg_1603
KEGG: ccs:CCNA_01373 hypothetical protein.
   
  
 0.555
Cseg_0129
Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ccs:CCNA_00131 Rrf2 family protein.
       0.461
Cseg_4092
KEGG: ccs:CCNA_03722 glutamate synthase (NADPH) large chain; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein.
  
  
 0.428
Cseg_1002
KEGG: ccs:CCNA_02860 chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
   
  
 0.425
Cseg_0264
Catalase; KEGG: gbe:GbCGDNIH1_1969 catalase; PFAM: Catalase related subgroup; Catalase domain protein.
  
  
 0.404
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.