STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0137KEGG: mno:Mnod_1113 transcriptional regulator, TrmB; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. (172 aa)    
Predicted Functional Partners:
Cseg_0138
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ccs:CCNA_03581 transporter, drug/metabolite exporter family.
       0.568
Cseg_0136
TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: ccs:CCNA_01727 methyl-accepting chemotaxis protein; SMART: chemotaxis sensory transducer.
       0.534
Cseg_3334
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: cak:Caul_1376 substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.418
Cseg_0139
PFAM: Usg family protein; KEGG: ccs:CCNA_03660 Usg protein.
       0.412
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.