STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0148TIGRFAM: double-strand break repair protein AddB; KEGG: ccs:CCNA_03651 ATP-dependent nuclease subunit B. (995 aa)    
Predicted Functional Partners:
Cseg_0147
Double-strand break repair helicase AddA; KEGG: ccs:CCNA_03652 ATP-dependent nuclease subunit A; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
   
 0.967
Cseg_0151
PFAM: protein of unknown function UPF0079; KEGG: ccs:CCNA_03648 ATP/GTP hydrolase.
 
     0.855
Cseg_0150
PFAM: aminoglycoside phosphotransferase; KEGG: ccs:CCNA_03649 Ser/Thr kinase-related phosphotransferase.
       0.834
Cseg_0149
PFAM: Nucleotidyl transferase; KEGG: cak:Caul_4851 nucleotidyl transferase.
       0.822
Cseg_4214
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.812
Cseg_4237
KEGG: ccs:CCNA_03867 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
 
   
 0.771
Cseg_1315
PFAM: protein of unknown function DUF1321; KEGG: ccs:CCNA_02187 hypothetical protein.
  
     0.760
Cseg_3509
KEGG: ccs:CCNA_03105 molecular chaperones (DnaJ family); PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
     0.759
Cseg_1665
PFAM: SmpA/OmlA domain protein; KEGG: ccs:CCNA_01427 lipoprotein, SmpA/OmlA family.
  
     0.756
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.743
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.