STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0154KEGG: pzu:PHZ_c0598 sensor histidine kinase; PFAM: HWE histidine kinase; PAS fold-4 domain protein; SMART: PAS domain containing protein. (477 aa)    
Predicted Functional Partners:
Cseg_3505
KEGG: ccs:CCNA_03110 two-component receiver domain protein; PFAM: response regulator receiver; SMART: response regulator receiver.
     0.776
Cseg_0178
KEGG: ccs:CCNA_00666 response regulator receiver domain protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
     0.762
Cseg_4037
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: response regulator receiver; KEGG: cak:Caul_0089 two-component response regulator; SMART: response regulator receiver.
 
   
 0.745
Cseg_3214
PFAM: MCP methyltransferase CheR-type; KEGG: swi:Swit_5354 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.
 
     0.696
Cseg_3119
KEGG: bra:BRADO2087 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
 
     0.652
Cseg_3872
KEGG: ccs:CCNA_00286 two-component receiver domain protein LovR; PFAM: response regulator receiver; SMART: response regulator receiver.
 
   
 0.652
Cseg_0547
KEGG: cak:Caul_4330 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
  
     0.601
Cseg_0738
KEGG: cak:Caul_3762 signal transduction histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
  
     0.599
Cseg_0039
PFAM: protein of unknown function DUF1206; KEGG: cak:Caul_3704 hypothetical protein.
  
     0.527
Cseg_0401
PFAM: phospholipase D/Transphosphatidylase; KEGG: ccs:CCNA_00556 phospholipase D.
 
     0.514
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.