STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0204PFAM: protein of unknown function DUF1052; KEGG: ccs:CCNA_03580 hypothetical protein. (151 aa)    
Predicted Functional Partners:
Cseg_0289
PFAM: protein of unknown function DUF983; KEGG: ccs:CCNA_03512 zinc-finger protein.
  
   
 0.689
Cseg_0842
PFAM: protein of unknown function DUF983; KEGG: ccs:CCNA_03214 hypothetical protein.
  
   
 0.643
Cseg_1389
PFAM: metallophosphoesterase; KEGG: ccs:CCNA_02122 putative ICC-like phosphoesterase.
  
     0.605
Cseg_3253
PFAM: protein of unknown function DUF983; KEGG: ccs:CCNA_01073 zinc-finger protein.
  
   
 0.578
Cseg_2816
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_02249 conserved cytosolic protein.
  
     0.512
Cseg_1390
DEAD/H associated domain protein; KEGG: ccs:CCNA_02121 ATP-dependent helicase; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
  
     0.511
Cseg_0205
PFAM: alpha/beta hydrolase fold; KEGG: mva:Mvan_1601 hypothetical protein.
       0.507
Cseg_0559
PFAM: Protein of unknown function DUF1790; KEGG: ccs:CCNA_00527 hypothetical protein.
  
     0.501
Cseg_3129
PFAM: conserved hypothetical protein; KEGG: ccs:CCNA_02430 conserved cytosolic protein; Belongs to the UPF0262 family.
  
   
 0.485
Cseg_0708
KEGG: ccs:CCNA_03318 cytosolic protein.
  
     0.467
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.