STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0245PFAM: protein of unknown function DUF610 YibQ; KEGG: ccs:CCNA_03552 hypothetical protein. (393 aa)    
Predicted Functional Partners:
rppH
NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
       0.772
Cseg_1372
PFAM: Tetratricopeptide TPR_4; KEGG: ccs:CCNA_02137 endoglucanase H.
  
     0.735
Cseg_3434
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; KEGG: ccs:CCNA_03033 tetratricopeptide repeat family protein.
 
     0.731
Cseg_3102
PFAM: Protein of unknown function DUF2336; KEGG: ccs:CCNA_02408 hypothetical protein.
  
     0.730
Cseg_3448
PFAM: TadE family protein; KEGG: ccs:CCNA_03046 TadE-related pilus assembly protein.
  
     0.719
fliE
KEGG: ccs:CCNA_01006 flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE.
  
     0.702
Cseg_2867
TIGRFAM: MJ0042 family finger-like protein; KEGG: ccs:CCNA_02298 MJ0042 family finger-like domain protein.
  
     0.696
Cseg_3443
PFAM: peptidase A24A prepilin type IV; KEGG: ccs:CCNA_03042 pilus assembly prepilin peptidase CpaA.
  
     0.690
Cseg_1112
PFAM: Flagellar assembly regulator FliX, class II; KEGG: ccs:CCNA_02664 flagellar assembly regulator FliX.
  
     0.681
Cseg_1613
PFAM: Protein of unknown function DUF2497; KEGG: ccs:CCNA_01380 pole-organizing protein PopZ.
  
     0.660
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.