STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0269Transporter; KEGG: ccs:CCNA_03532 transporter. (590 aa)    
Predicted Functional Partners:
Cseg_0185
PFAM: Abortive infection protein; KEGG: ccs:CCNA_00229 CAAX amino terminal protease family protein.
 
    0.736
Cseg_3931
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_00224 hypothetical protein.
  
     0.701
Cseg_0995
KEGG: ccs:CCNA_02867 phage tail length tape measure-related protein.
 
 
   0.683
Cseg_3157
PFAM: Protein of unknown function DUF2170; KEGG: ccs:CCNA_02448 hypothetical protein.
  
     0.628
Cseg_0270
PFAM: peptidase S10 serine carboxypeptidase; KEGG: ccs:CCNA_03531 carboxypeptidase S1.
   
 
 0.615
Cseg_3158
PFAM: Protein of unknown function DUF2491; KEGG: ccs:CCNA_02449 hypothetical protein.
  
     0.612
Cseg_0678
PFAM: MgtC/SapB transporter; KEGG: pzu:PHZ_c3070 putative Mg++ transport associated protein, MgtC.
  
 
 0.591
Cseg_2679
KEGG: ccs:CCNA_01260 hypothetical protein.
  
     0.588
Cseg_0664
PFAM: protein of unknown function DUF692; KEGG: cak:Caul_0757 hypothetical protein; Belongs to the UPF0276 family.
   
    0.581
Cseg_3549
PFAM: flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ccs:CCNA_03159 sulfite reductase (NADPH) flavoprotein alpha-component.
    
 0.580
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.