STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0308PFAM: protein of unknown function DUF328; KEGG: ccs:CCNA_03496 cytosolic protein; Belongs to the UPF0246 family. (255 aa)    
Predicted Functional Partners:
Cseg_1042
PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_02742 oxalate/formate antiporter.
  
    0.714
Cseg_1788
PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_1791 major facilitator transporter.
  
    0.714
Cseg_0309
KEGG: ccs:CCNA_03495 D-beta-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.614
Cseg_0307
PFAM: Domain of unknown function DUF1801; KEGG: sus:Acid_1884 hypothetical protein.
       0.613
Cseg_0310
PFAM: Patatin; KEGG: ccs:CCNA_03494 serine protease.
       0.609
Cseg_0311
PFAM: NUDIX hydrolase; KEGG: ccs:CCNA_03493 phosphohydrolase (MutT/NUDIX family protein); Belongs to the Nudix hydrolase family.
       0.524
mnmC
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
 
     0.477
Cseg_3156
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: ccs:CCNA_02447 putative alpha helical protein.
      
 0.434
Cseg_4200
PFAM: transcriptional regulator PadR family protein; KEGG: ccs:CCNA_03805 transcriptional regulator.
      
 0.434
Cseg_4059
KEGG: ccs:CCNA_03689 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; Belongs to the AlaDH/PNT family.
      
 0.428
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.