STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0309KEGG: ccs:CCNA_03495 D-beta-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (265 aa)    
Predicted Functional Partners:
Cseg_0532
PFAM: pyruvate carboxyltransferase; KEGG: ccs:CCNA_00500 hydroxymethylglutaryl-CoA lyase.
  
 
 0.914
Cseg_2350
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: ccs:CCNA_02489 acetate/3-ketoacid CoA transferase, subunit B; PFAM: coenzyme A transferase.
  
 0.908
Cseg_3945
TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: ccs:CCNA_00207 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; PFAM: coenzyme A transferase.
  
 0.908
Cseg_2349
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: ccs:CCNA_02488 acetate/3-ketoacid CoA transferase, subunit A; PFAM: coenzyme A transferase.
    
  0.900
Cseg_3946
TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: ccs:CCNA_00206 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A; PFAM: coenzyme A transferase.
    
  0.900
Cseg_0310
PFAM: Patatin; KEGG: ccs:CCNA_03494 serine protease.
 
 
   0.894
Cseg_0311
PFAM: NUDIX hydrolase; KEGG: ccs:CCNA_03493 phosphohydrolase (MutT/NUDIX family protein); Belongs to the Nudix hydrolase family.
       0.765
Cseg_0308
PFAM: protein of unknown function DUF328; KEGG: ccs:CCNA_03496 cytosolic protein; Belongs to the UPF0246 family.
       0.614
Cseg_2432
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gdi:GDI_2727 hypothetical protein.
  
     0.603
Cseg_2304
KEGG: ccs:CCNA_01746 malonyl-CoA-(acyl-carrier-protein) transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
 
 
 0.441
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.