STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0332KEGG: cak:Caul_4390 hypothetical protein. (227 aa)    
Predicted Functional Partners:
argS
TIGRFAM: arginyl-tRNA synthetase; KEGG: ccs:CCNA_03469 arginyl-tRNA synthetase.
 
     0.857
Cseg_1925
KEGG: cak:Caul_2903 hypothetical protein.
  
     0.772
Cseg_4009
KEGG: ccs:CCNA_00148 hypothetical protein.
  
     0.772
Cseg_1311
PFAM: endodeoxyribonuclease RusA; KEGG: ccs:CCNA_02192 hypothetical protein.
  
     0.734
Cseg_1359
PFAM: Phosphoglycerate mutase; KEGG: ccs:CCNA_02152 phosphoglycerate mutase.
  
     0.725
Cseg_0111
KEGG: ccs:CCNA_00111 hypothetical protein.
  
     0.712
Cseg_3347
PFAM: Protein of unknown function DUF2336; KEGG: ccs:CCNA_00997 hypothetical protein.
  
     0.695
Cseg_3102
PFAM: Protein of unknown function DUF2336; KEGG: ccs:CCNA_02408 hypothetical protein.
  
     0.683
Cseg_1240
Histidine phosphotransferase ShpA; Manually curated; KEGG: ccs:CCNA_01171 histidine phosphotransferase ShpA.
  
     0.679
Cseg_1488
KEGG: ccs:CCNA_01303 hypothetical protein.
  
     0.677
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.