STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0364Folate-binding protein YgfZ; KEGG: ccs:CCNA_00389 aminomethyltransferase family protein; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; Belongs to the GcvT family. (264 aa)    
Predicted Functional Partners:
Cseg_2146
KEGG: ccs:CCNA_01934 HesB protein family; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
 
 0.672
Cseg_1419
KEGG: ccs:CCNA_02088 HesB protein family; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
 
 0.645
Cseg_0365
PFAM: glycosyl transferase family 9; KEGG: ccs:CCNA_00390 ADP-heptose--LPS heptosyltransferase.
       0.578
Cseg_0047
Siroheme synthase; KEGG: ccs:CCNA_00024 uroporphyrin-III C-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase; TIGRFAM: siroheme synthase; PFAM: Sirohaem synthase, dimerisation domain.
     
 0.559
Cseg_0012
PFAM: Scaffold protein Nfu/NifU; nitrogen-fixing NifU domain protein; KEGG: ccs:CCNA_00060 mitochondrial-type Fe-S cluster assembly protein NFU.
  
  
 0.519
Cseg_1200
Glutaredoxin-like protein; KEGG: ccs:CCNA_02591 glutaredoxin; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
  
   
 0.471
Cseg_0366
KEGG: ccs:CCNA_00392 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3.
       0.467
Cseg_0882
PFAM: Methyltransferase type 11; KEGG: ccs:CCNA_00874 biotin synthesis protein BioC.
  
     0.421
Cseg_4089
PFAM: NAD-dependent epimerase/dehydratase; KEGG: ccs:CCNA_03718 NADH-ubiquinone oxidoreductase subunit.
  
 
 0.409
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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