STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0373KEGG: ccs:CCNA_00399 zinc metallohydrolase, glyoxalase II family. (365 aa)    
Predicted Functional Partners:
Cseg_0375
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ccs:CCNA_00401 delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase.
  
    0.665
Cseg_0374
KEGG: ccs:CCNA_00400 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR.
       0.634
Cseg_0376
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_00403 short chain dehydrogenase.
   
   0.559
Cseg_0377
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ccs:CCNA_00405 short chain dehydrogenase.
   
   0.559
Cseg_0372
KEGG: ccs:CCNA_00398 hypothetical protein.
       0.531
Cseg_2034
KEGG: cak:Caul_2665 rhodanese domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
 
 0.502
Cseg_1288
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ccs:CCNA_02216 ABM family monooxygenase.
  
    0.424
Cseg_0614
PFAM: thioesterase superfamily protein; KEGG: ccs:CCNA_03418 thioesterase superfamily protein.
 
    0.412
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.