STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0408PFAM: SNARE associated Golgi protein; KEGG: ccs:CCNA_00563 SNARE-associated family membrane protein. (245 aa)    
Predicted Functional Partners:
Cseg_1903
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cak:Caul_4997 mercuric reductase.
      0.830
Cseg_0406
PFAM: protein of unknown function DUF952; KEGG: ccs:CCNA_00561 conserved cytosolic protein.
 
     0.816
Cseg_0407
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.791
Cseg_0405
PFAM: Phosphoglycerate mutase; KEGG: ccs:CCNA_00560 phosphohistidine phosphatase SixA.
       0.785
Cseg_0409
KEGG: ccs:CCNA_00564 sensory transduction protein kinase CenK; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
       0.782
Cseg_0410
KEGG: cak:Caul_3973 hypothetical protein.
       0.741
Cseg_3801
KEGG: ccs:CCNA_00346 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region.
      0.622
Cseg_2951
Glutathione-disulfide reductase; Maintains high levels of reduced glutathione.
      0.571
Cseg_0402
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ccs:CCNA_00557 endonuclease/exonuclease/phosphatase family protein.
     
 0.569
Cseg_0403
KEGG: ccs:CCNA_00558 methyltransferase; TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein.
       0.562
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.