STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0442KEGG: cak:Caul_0310 hypothetical protein. (363 aa)    
Predicted Functional Partners:
Cseg_0438
PFAM: Methyltransferase type 11; KEGG: pnu:Pnuc_0321 methyltransferase type 11.
 
     0.817
Cseg_0436
PFAM: ABC-2 type transporter; KEGG: ccs:CCNA_00671 teichoic acid translocation permease protein TagG.
 
     0.800
Cseg_0439
PFAM: Rhamnan synthesis F; KEGG: ccs:CCNA_00669 hypothetical protein.
 
     0.800
Cseg_0437
ABC transporter related protein; KEGG: ccs:CCNA_00670 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
Cseg_0440
KEGG: ccs:CCNA_01924 capsular polysaccharide biosynthesis protein.
       0.773
Cseg_0441
KEGG: ccs:CCNA_00667 capsular polysaccharide biosynthesis protein.
       0.773
Cseg_0435
KEGG: cak:Caul_0619 hypothetical protein.
       0.445
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.