STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0463PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_3091 TonB-dependent receptor. (788 aa)    
Predicted Functional Partners:
Cseg_2360
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_5189 TonB-dependent receptor.
  
    0.705
Cseg_3293
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor.
  
    0.666
Cseg_3938
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_4694 TonB-dependent receptor.
  
   
 0.656
Cseg_3483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_1228 TonB-dependent receptor.
  
     0.628
Cseg_1483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c1449 TonB-dependent receptor.
  
     0.613
Cseg_3506
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_03108 TonB-dependent outer membrane receptor.
  
    0.608
Cseg_3921
KEGG: neu:NE1190 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
  
 0.599
Cseg_3106
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02412 TonB protein.
 
 
 0.585
Cseg_2562
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: cak:Caul_2243 TonB-dependent receptor.
  
    0.568
Cseg_1181
KEGG: pzu:PHZ_c2766 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
  
 0.550
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.