STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0468PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0968 TonB-dependent receptor. (709 aa)    
Predicted Functional Partners:
Cseg_3921
KEGG: neu:NE1190 TonB-dependent receptor protein; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
  
 0.708
Cseg_2360
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_5189 TonB-dependent receptor.
  
    0.689
Cseg_3483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_1228 TonB-dependent receptor.
  
     0.608
Cseg_1181
KEGG: pzu:PHZ_c2766 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
  
 0.593
Cseg_3106
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02412 TonB protein.
 
 
 0.586
Cseg_3506
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_03108 TonB-dependent outer membrane receptor.
  
    0.558
Cseg_2094
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01695 TonB-dependent outer membrane receptor.
  
    0.557
Cseg_1483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c1449 TonB-dependent receptor.
  
     0.554
Cseg_3293
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor.
  
    0.553
Cseg_3320
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccs:CCNA_01033 FecR family protein.
 
  
 0.541
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.