STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0472PFAM: putative esterase; KEGG: chl:Chy400_3408 putative esterase. (307 aa)    
Predicted Functional Partners:
Cseg_0473
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cak:Caul_0960 alpha/beta hydrolase domain-containing protein.
       0.689
Cseg_0976
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: ccs:CCNA_02894 endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10.
  
   0.474
Cseg_0474
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: cak:Caul_0963 alpha/beta hydrolase domain-containing protein.
       0.451
Cseg_0356
KEGG: ccs:CCNA_00384 glucan endo-1,3-beta-glucosidase; PFAM: glycoside hydrolase family 16.
 
     0.443
Cseg_2938
Transcriptional regulator, LacI family; KEGG: ccs:CCNA_02367 maltose transport transcriptional repressor MalI; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
 
     0.430
Cseg_0791
KEGG: cak:Caul_4035 mannosyl-oligosaccharide 1,2-alpha-mannosidase; PFAM: glycoside hydrolase family 47.
    
   0.412
Cseg_3429
KEGG: cak:Caul_4583 thiol-disulfide isomerase.
    
   0.412
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.