STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0494Pectinesterase; KEGG: cja:CJA_0181 pectin methylesterase, putative, pme8C; PFAM: Pectinesterase. (365 aa)    
Predicted Functional Partners:
Cseg_2738
PFAM: lipolytic protein G-D-S-L family; KEGG: cpi:Cpin_5506 lipolytic protein G-D-S-L family.
   
 0.909
Cseg_2732
KEGG: ote:Oter_1170 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.849
Cseg_2730
PFAM: lipolytic protein G-D-S-L family; KEGG: ote:Oter_1336 GDSL family lipase.
   
 0.784
Cseg_0875
KEGG: pzu:PHZ_c2479 hypothetical protein.
  
   
 0.749
Cseg_3135
KEGG: ccr:CC_0543 hypothetical protein.
  
   
 0.746
Cseg_2013
Xylan 1,4-beta-xylosidase; KEGG: cak:Caul_2413 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.738
Cseg_2735
PFAM: FG-GAP repeat protein; KEGG: bsu:BSU07050 polysaccharide lyase; lipoprotein.
  
   
 0.734
Cseg_0977
Xylan 1,4-beta-xylosidase; KEGG: ccs:CCNA_02893 beta-xylosidase/alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.725
Cseg_1881
KEGG: ami:Amir_2865 hypothetical protein.
  
   
 0.688
Cseg_1900
Alpha-L-fucosidase; KEGG: ote:Oter_4283 alpha/beta hydrolase domain-containing protein.
  
   
 0.684
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.