STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0527PFAM: nitrogen-fixing NifU domain protein; KEGG: ccs:CCNA_00494 transport protein. (153 aa)    
Predicted Functional Partners:
Cseg_2152
KEGG: ccs:CCNA_01941 cysteine desulfhydrase/selenocysteine lyase; PFAM: aminotransferase class V.
  
 0.999
Cseg_2148
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.998
Cseg_1286
KEGG: ccs:CCNA_02218 DnaJ-like protein DjlA; PFAM: protein of unknown function DUF1332; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
 
 0.991
Cseg_2146
KEGG: ccs:CCNA_01934 HesB protein family; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
  
 0.953
Cseg_2150
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: ccs:CCNA_01938 ATP-dependent transporter SufC; SMART: AAA ATPase.
 
  
 0.946
Cseg_1955
KEGG: ccs:CCNA_01543 chaperone protein DnaK.
  
 
 0.905
Cseg_0160
PFAM: ferredoxin; KEGG: cak:Caul_4835 ferredoxin.
  
 0.903
Cseg_3028
PFAM: ferredoxin; KEGG: ccs:CCNA_03639 ferredoxin, 2Fe-2s.
  
 0.903
Cseg_2341
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: ccs:CCNA_02477 vanillate demethylase oxidoreductase subunit VanB.
  
 0.861
Cseg_2149
PFAM: SufBD protein; KEGG: ccs:CCNA_01937 SufD protein.
 
  
 0.851
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.