STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0534PFAM: glycosyl transferase family 2; KEGG: ccs:CCNA_00502 glycosyl transferase family protein. (245 aa)    
Predicted Functional Partners:
Cseg_0533
PFAM: glycosyl transferase family 39; KEGG: ccs:CCNA_00501 glucosyltransferase.
 
  
 0.962
Cseg_3944
PFAM: glycosyl transferase family 39; KEGG: ccs:CCNA_00209 undecaprenyl-phosphomannose:protein mannosyltransferase.
 
  
 0.697
Cseg_0535
KEGG: ccs:CCNA_00503 hypothetical protein.
 
     0.662
Cseg_0532
PFAM: pyruvate carboxyltransferase; KEGG: ccs:CCNA_00500 hydroxymethylglutaryl-CoA lyase.
       0.594
Cseg_0531
KEGG: ccs:CCNA_00499 hypothetical protein.
       0.565
Cseg_3808
KEGG: cak:Caul_0228 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; glycoside hydrolase family 18; glycosyl transferase family 2; SMART: chitinase II.
  
 
 0.554
Cseg_1870
KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase.
  
  
 0.483
Cseg_2765
KEGG: ccr:CC_2425 HfsE; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.483
Cseg_4095
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ccs:CCNA_03726 transcriptional regulator; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.466
Cseg_0437
ABC transporter related protein; KEGG: ccs:CCNA_00670 O-antigen export system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.458
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.