STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0558PFAM: protein of unknown function DUF526; KEGG: ccs:CCNA_00526 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Cseg_1925
KEGG: cak:Caul_2903 hypothetical protein.
  
     0.693
Cseg_3132
KEGG: ccs:CCNA_02434 cytosolic protein.
  
     0.638
Cseg_1930
KEGG: ccr:CC_1451 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
  
     0.586
Cseg_0559
PFAM: Protein of unknown function DUF1790; KEGG: ccs:CCNA_00527 hypothetical protein.
       0.584
Cseg_0630
PFAM: protein of unknown function DUF465; KEGG: cak:Caul_0911 hypothetical protein.
  
     0.580
Cseg_4009
KEGG: ccs:CCNA_00148 hypothetical protein.
  
     0.553
Cseg_2888
PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: ccs:CCNA_02320 deoxycytidine triphosphate deaminase.
  
     0.539
Cseg_0556
PFAM: protein of unknown function DUF185; KEGG: ccs:CCNA_00524 conserved cytosolic protein.
       0.528
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.528
hisS
TIGRFAM: histidyl-tRNA synthetase; KEGG: ccs:CCNA_03628 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein.
  
     0.506
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.