STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0590PFAM: peptidase M28; KEGG: ccs:CCNA_03445 aminopeptidase. (805 aa)    
Predicted Functional Partners:
Cseg_3845
Peptidase M14 carboxypeptidase A; KEGG: ccs:CCNA_00313 hypothetical protein; manually curated; PFAM: peptidase M14 carboxypeptidase A.
  
   
 0.480
Cseg_1843
PFAM: peptidase M56 BlaR1; Ankyrin; KEGG: ccs:CCNA_01711 transcriptional regulator.
  
 
 0.473
Cseg_4208
KEGG: ccs:CCNA_03813 intermediate filament-like cell shape determinant CreS.
  
     0.472
Cseg_2848
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: ccs:CCNA_02281 membrane alanine aminopeptidase.
 
 
 
 0.466
Cseg_4071
PFAM: peptidase M16 domain protein; KEGG: ccs:CCNA_03699 peptidase, M16 family.
 
     0.464
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
  
 
   0.457
Cseg_1199
PFAM: acyl-ACP thioesterase; KEGG: ccs:CCNA_02592 thioesterase.
  
     0.449
Cseg_0591
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_03444 TonB-dependent receptor.
       0.447
Cseg_3993
PFAM: O-antigen polymerase; KEGG: ccs:CCNA_00164 O-antigen polymerase.
  
     0.425
Cseg_0185
PFAM: Abortive infection protein; KEGG: ccs:CCNA_00229 CAAX amino terminal protease family protein.
 
     0.419
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.