STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0602KEGG: ccs:CCNA_03429 hydrolase (HAD superfamily); TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase. (206 aa)    
Predicted Functional Partners:
Cseg_0581
PFAM: Aldehyde Dehydrogenase; KEGG: ccs:CCNA_00424 aldehyde dehydrogenase.
    
  0.900
Cseg_2668
PFAM: Aldehyde Dehydrogenase; KEGG: ccs:CCNA_01274 piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.900
rpmJ
KEGG: ccs:CCNA_03430 LSU ribosomal protein L36P; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
 
   
 0.849
Cseg_0603
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: cak:Caul_0875 6-phosphogluconate dehydrogenase NAD-binding.
       0.555
Cseg_0600
KEGG: ccs:CCNA_03431 membrane-bound lytic murein transglycosylase B; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein.
       0.517
Cseg_0604
PFAM: Protein of unknown function DUF2312; KEGG: ccs:CCNA_03428 cytosolic protein; Belongs to the UPF0335 family.
       0.448
Cseg_0190
HAD-superfamily hydrolase, phosphatase; KEGG: ccs:CCNA_00244 hydrolase (HAD superfamily); TIGRFAM: HAD-superfamily hydrolase, phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.
  
     0.412
Cseg_0204
PFAM: protein of unknown function DUF1052; KEGG: ccs:CCNA_03580 hypothetical protein.
  
     0.409
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.