STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0607KEGG: ccs:CCNA_03425 hypothetical protein. (46 aa)    
Predicted Functional Partners:
Cseg_0608
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: ccs:CCNA_03424 AAA-family response regulator TacA; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase.
       0.773
Cseg_0609
PFAM: protein of unknown function DUF661; KEGG: ccs:CCNA_03423 hypothetical protein.
       0.522
Cseg_0610
Oligoendopeptidase, pepF/M3 family; KEGG: ccs:CCNA_03422 oligoendopeptidase F; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F.
       0.439
Cseg_0611
PFAM: ABC-1 domain protein; KEGG: ccs:CCNA_03421 2-polyprenylphenol 6-hydroxylase accessory protein UbiB.
       0.439
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.