STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0610Oligoendopeptidase, pepF/M3 family; KEGG: ccs:CCNA_03422 oligoendopeptidase F; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F. (597 aa)    
Predicted Functional Partners:
Cseg_0611
PFAM: ABC-1 domain protein; KEGG: ccs:CCNA_03421 2-polyprenylphenol 6-hydroxylase accessory protein UbiB.
       0.792
Cseg_0609
PFAM: protein of unknown function DUF661; KEGG: ccs:CCNA_03423 hypothetical protein.
       0.645
Cseg_1369
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
   
   0.587
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
  
    0.556
Cseg_0751
Manually curated; KEGG: ccs:CCNA_03309 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; Belongs to the AB hydrolase superfamily. MetX family.
   
    0.491
Cseg_3342
KEGG: ccs:CCNA_01003 flagellar biosynthesis protein FliO.
  
     0.470
Cseg_0608
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: ccs:CCNA_03424 AAA-family response regulator TacA; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase.
       0.455
Cseg_0029
PFAM: protein of unknown function DUF448; KEGG: ccs:CCNA_00042 cytosolic protein/LSU ribosomal protein L7AE.
 
     0.452
Cseg_1222
KEGG: ccs:CCNA_02572 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.450
Cseg_2354
KEGG: ccs:CCNA_02493 3-carboxy-cis,cis-muconate cycloisomerase; TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase.
  
    0.450
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.