STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0642ABC transporter related protein; KEGG: ccs:CCNA_03389 lantibiotic transport ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (311 aa)    
Predicted Functional Partners:
Cseg_0643
KEGG: ccs:CCNA_03388 lantibiotic export permease protein.
 
  
 0.921
Cseg_3083
KEGG: ccs:CCNA_01587 ABC transporter permease protein.
  
 
 0.812
Cseg_0644
KEGG: ccs:CCNA_03387 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase.
  
    0.644
Cseg_1066
ABC transporter related protein; KEGG: ccs:CCNA_02717 maltose/maltodextrin transport ATP-binding protein MalK; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.595
Cseg_0641
KEGG: ccs:CCNA_03390 hypothetical protein.
       0.551
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.545
Cseg_0640
KEGG: ccs:CCNA_03391 transcriptional regulator, Cro/CI family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.545
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
   0.519
Cseg_0645
KEGG: cak:Caul_4715 alpha-1,2-mannosidase; TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92.
       0.519
Cseg_3851
ABC transporter related protein; KEGG: ccs:CCNA_00307 phospholipid-lipopolysaccharide ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
0.511
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.