STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0656PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ccs:CCNA_03372 bacterioferritin-associated ferredoxin. (61 aa)    
Predicted Functional Partners:
Cseg_0657
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
  
 
 0.891
Cseg_3357
KEGG: cak:Caul_1344 hypothetical protein.
 
     0.659
Cseg_4159
KEGG: ccs:CCNA_03826 hypothetical protein.
  
     0.646
Cseg_4061
PFAM: aldo/keto reductase; KEGG: ccs:CCNA_03691 IolS protein.
  
     0.591
Cseg_1254
KEGG: ccs:CCNA_01183 hypothetical protein.
  
     0.563
Cseg_3121
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02419 TonB1 protein.
 
  
 0.551
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
       0.546
Cseg_4033
PFAM: Entericidin EcnAB; KEGG: ccs:CCNA_03587 entericidin B-like protein.
  
     0.546
Cseg_0688
TolA protein; KEGG: ccs:CCNA_03339 TolA protein.
 
  
 0.536
Cseg_1336
PFAM: protein of unknown function DUF214; KEGG: ccs:CCNA_02172 transporter.
 
     0.536
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.