STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0688TolA protein; KEGG: ccs:CCNA_03339 TolA protein. (271 aa)    
Predicted Functional Partners:
Cseg_0687
Protein TolR; KEGG: ccs:CCNA_03340 TolR protein; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.963
Cseg_0686
Protein TolQ; KEGG: ccs:CCNA_03341 TolQ protein; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel.
  
 
 0.960
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.912
Cseg_3122
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ccs:CCNA_02420 TonB accessory protein ExbD.
  
 
 0.821
Cseg_3833
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ccs:CCNA_00324 TolR protein.
  
 
 0.821
Cseg_3123
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ccs:CCNA_02421 TonB accessory protein ExbB.
  
 
 0.811
Cseg_3274
KEGG: ccs:CCNA_01051 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
 
 0.790
Cseg_0174
KEGG: ccs:CCNA_00236 hypothetical protein.
  
     0.727
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
  
     0.727
Cseg_1370
KEGG: ccs:CCNA_02139 polar flagellum positioning protein PflI.
  
     0.711
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.