STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0713PFAM: beta-lactamase; KEGG: sus:Acid_1314 beta-lactamase. (479 aa)    
Predicted Functional Partners:
Cseg_1323
PFAM: beta-lactamase; KEGG: mmr:Mmar10_1527 beta-lactamase.
  
     0.770
Cseg_0714
PFAM: aminoglycoside phosphotransferase; KEGG: ccs:CCNA_00968 gluconate kinase.
       0.543
Cseg_1645
PFAM: beta-lactamase; KEGG: ttu:TERTU_2036 putative beta-lactamase.
  
     0.463
Cseg_3535
PFAM: peptidase M56 BlaR1; KEGG: cak:Caul_3733 peptidase M56 BlaR1.
  
     0.440
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.