STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0739KEGG: ccs:CCNA_00534 hypothetical protein. (343 aa)    
Predicted Functional Partners:
Cseg_1848
PFAM: amidohydrolase; WD40 domain protein beta Propeller; KEGG: ami:Amir_5049 amidohydrolase.
  
     0.555
Cseg_3318
PFAM: peptidase M14 carboxypeptidase A; KEGG: ccs:CCNA_01036 hypothetical protein.
 
     0.518
Cseg_0738
KEGG: cak:Caul_3762 signal transduction histidine kinase; PFAM: histidine kinase dimerisation/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
       0.482
Cseg_0119
KEGG: ccs:CCNA_00121 hypothetical protein.
  
     0.476
Cseg_0270
PFAM: peptidase S10 serine carboxypeptidase; KEGG: ccs:CCNA_03531 carboxypeptidase S1.
  
     0.449
Cseg_3145
Alpha-1,2-mannosidase; KEGG: ccs:CCNA_00567 hypothetical protein; TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92.
  
     0.445
Cseg_3395
PFAM: peptidase M28; KEGG: ccs:CCNA_00933 hypothetical protein.
  
     0.440
Cseg_0740
KEGG: ccs:CCNA_00535 hypothetical protein.
       0.435
Cseg_1269
PFAM: lipolytic protein G-D-S-L family; KEGG: ccs:CCNA_02235 putative secreted protein.
 
   
 0.418
Cseg_1278
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ccs:CCNA_02226 glyoxalase family protein.
  
     0.418
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.