STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0805PFAM: peptidase M56 BlaR1; KEGG: ccs:CCNA_03253 hypothetical protein. (442 aa)    
Predicted Functional Partners:
Cseg_0807
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: ccs:CCNA_03252 transcriptional regulatory protein.
 
  
 0.879
Cseg_1572
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: ccs:CCNA_01578 beta-lactamase repressor.
 
  
 0.810
Cseg_1844
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: ccs:CCNA_01712 beta-lactamase repressor.
 
  
 0.798
Cseg_3535
PFAM: peptidase M56 BlaR1; KEGG: cak:Caul_3733 peptidase M56 BlaR1.
  
     0.769
Cseg_1015
PFAM: peptidase M56 BlaR1; KEGG: ccs:CCNA_02840 transcriptional regulator.
  
     0.752
Cseg_1843
PFAM: peptidase M56 BlaR1; Ankyrin; KEGG: ccs:CCNA_01711 transcriptional regulator.
 
     0.662
Cseg_0806
PFAM: peptidase M56 BlaR1; KEGG: ccs:CCNA_03253 hypothetical protein.
 
    
0.632
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.416
Cseg_2261
PFAM: amidohydrolase; KEGG: ccs:CCNA_02051 dihydroorotase.
  
     0.408
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.