STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0818PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccs:CCNA_03238 transporter. (302 aa)    
Predicted Functional Partners:
Cseg_0819
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccs:CCNA_03236 spermidine/putrescine transport system permease protein PotC.
 
0.999
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 0.999
Cseg_0817
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.998
Cseg_0821
Gamma-glutamyl-gamma-aminobutyrate hydrolase; KEGG: ccs:CCNA_03234 glutamine amidotransferase, class I; PFAM: peptidase C26.
 
     0.602
cysA
Sulfate ABC transporter, ATPase subunit; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
   
 0.579
Cseg_0824
PFAM: FAD dependent oxidoreductase; KEGG: ccs:CCNA_03229 FAD dependent oxidoreductase.
 
    0.534
Cseg_0816
Glutamate--putrescine ligase; KEGG: ccs:CCNA_03240 glutamine synthetase; PFAM: glutamine synthetase catalytic region.
 
   
 0.526
Cseg_0822
PFAM: aminotransferase class-III; KEGG: ccs:CCNA_03233 gamma-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.490
Cseg_2190
KEGG: ccs:CCNA_01980 methylisocitrate lyase.
   
    0.453
Cseg_0815
PFAM: aminotransferase class-III; KEGG: ccs:CCNA_03241 glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.439
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.