STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0826PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_03227 TonB-dependent receptor. (789 aa)    
Predicted Functional Partners:
Cseg_0825
Manually curated; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; sulfotransferase; KEGG: ccs:CCNA_03228 tetratricopeptide repeat family protein; SMART: Tetratricopeptide repeat.
 
     0.862
Cseg_2360
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_5189 TonB-dependent receptor.
  
    0.683
Cseg_3106
TIGRFAM: TonB family protein; KEGG: ccs:CCNA_02412 TonB protein.
 
 
 0.653
Cseg_3209
PFAM: TPR repeat-containing protein; KEGG: cak:Caul_2992 sulfotransferase.
  
     0.640
Cseg_2562
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: cak:Caul_2243 TonB-dependent receptor.
  
    0.632
Cseg_3483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_1228 TonB-dependent receptor.
  
     0.612
Cseg_3293
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor.
  
    0.609
Cseg_2094
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01695 TonB-dependent outer membrane receptor.
  
    0.604
Cseg_0688
TolA protein; KEGG: ccs:CCNA_03339 TolA protein.
 
 
 0.580
Cseg_1483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c1449 TonB-dependent receptor.
  
     0.561
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.