STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0871PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: ccs:CCNA_03163 peptidyl-prolyl cis-trans isomerase. (329 aa)    
Predicted Functional Partners:
argJ
Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
  
    0.798
Cseg_2292
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: ccs:CCNA_01759 peptidyl-prolyl cis-trans isomerase.
 
   
 0.635
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
  
  
 0.621
Cseg_2201
PFAM: outer membrane chaperone Skp (OmpH); KEGG: ccs:CCNA_01991 hypothetical protein.
 
  
 0.541
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
 
  
 0.529
Cseg_2323
KEGG: ccs:CCNA_01725 PQQ enzyme repeat family protein.
   
 
 0.515
Cseg_0553
KEGG: ccs:CCNA_00519 hypothetical protein.
  
     0.485
Cseg_3466
KEGG: bxe:Bxe_B0221 GAF sensor hybrid histidine kinase; PFAM: HWE histidine kinase; MASE1 domain protein; GAF domain protein; SMART: GAF domain protein.
  
 
 0.482
Cseg_1240
Histidine phosphotransferase ShpA; Manually curated; KEGG: ccs:CCNA_01171 histidine phosphotransferase ShpA.
  
     0.477
Cseg_0332
KEGG: cak:Caul_4390 hypothetical protein.
  
     0.471
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.