STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0877KEGG: ccs:CCNA_00880 hypothetical protein. (516 aa)    
Predicted Functional Partners:
Cseg_0876
KEGG: ccs:CCNA_00881 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    0.916
Cseg_2195
KEGG: ccs:CCNA_01985 ABC transporter ATP-binding protein.
  
     0.763
Cseg_4208
KEGG: ccs:CCNA_03813 intermediate filament-like cell shape determinant CreS.
 
    0.744
Cseg_0904
PFAM: peptidase S41; KEGG: ccs:CCNA_00686 peptidase family S41 protein.
  
     0.730
Cseg_2859
PFAM: acyltransferase 3; KEGG: ccs:CCNA_02291 hypothetical protein.
 
   
 0.728
Cseg_1235
KEGG: ccs:CCNA_01163 ice nucleation protein.
  
     0.680
Cseg_0550
PFAM: Tetratricopeptide TPR_4; KEGG: ccs:CCNA_00516 integral membrane protein.
  
     0.673
Cseg_0950
PFAM: GtrA family protein; KEGG: ccs:CCNA_02984 monosaccharide translocase (flippase type).
 
   
 0.647
Cseg_4067
PFAM: cyclase/dehydrase; KEGG: ccs:CCNA_03697 cyclase/dehydrase.
 
     0.645
Cseg_3497
KEGG: ccs:CCNA_03102 hypothetical protein.
  
     0.626
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.