STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0880KEGG: rme:Rmet_5654 putative dehydrogenase. (149 aa)    
Predicted Functional Partners:
Cseg_0881
Mutator MutT protein; KEGG: ccs:CCNA_00876 7,8-dihydro-8-oxoguanine-triphosphatase; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase.
       0.544
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.543
Cseg_2623
Superoxide dismutase copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
 
 0.520
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.483
Cseg_0264
Catalase; KEGG: gbe:GbCGDNIH1_1969 catalase; PFAM: Catalase related subgroup; Catalase domain protein.
  
 
 0.459
Cseg_0759
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
 0.459
Cseg_1955
KEGG: ccs:CCNA_01543 chaperone protein DnaK.
   
 0.448
Cseg_1616
Beta-lactamase; KEGG: sml:Smlt0115 putative beta-lactamase precursor (cephalosporinase); PFAM: beta-lactamase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.
 
  
 0.437
Cseg_0158
KEGG: ccs:CCNA_03641 succinate dehydrogenase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.435
Cseg_0879
KEGG: ccs:CCNA_00878 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
   
 
 0.428
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.