STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0898PFAM: protein of unknown function DUF6 transmembrane; KEGG: ccs:CCNA_00891 transporter, drug/metabolite exporter family. (319 aa)    
Predicted Functional Partners:
Cseg_0897
KEGG: ccs:CCNA_00889 hypothetical protein.
 
     0.560
Cseg_0899
KEGG: cak:Caul_0953 hypothetical protein.
       0.553
Cseg_2767
KEGG: ccs:CCNA_02517 hypothetical protein.
  
     0.456
Cseg_3478
KEGG: avn:Avin_05080 cellulose synthase subunit C; PFAM: cellulose synthase operon C domain protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; RNA-processing protein HAT helix repeating-containing protein.
 
     0.425
Cseg_1297
KEGG: ccs:CCNA_02207 hypothetical protein.
 
     0.416
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.