STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_0916PFAM: Domain of unknown function DUF1801; KEGG: bte:BTH_II1623 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Cseg_3674
PFAM: Protein of unknown function DUF2086; KEGG: ccs:CCNA_00745 hypothetical protein.
  
     0.545
Cseg_0915
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1672 TonB-dependent receptor.
       0.463
Cseg_3929
KEGG: ccs:CCNA_03634 hypothetical protein.
 
     0.459
Cseg_1522
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ccs:CCNA_01338 glyoxalase family protein.
 
     0.450
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.