STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1086PFAM: regulatory protein TetR; KEGG: ccs:CCNA_02691 transcriptional regulator, TetR family. (225 aa)    
Predicted Functional Partners:
Cseg_1087
PFAM: protein of unknown function DUF989; KEGG: ccs:CCNA_02690 hypothetical protein.
       0.785
Cseg_1088
OHCU decarboxylase; KEGG: ccs:CCNA_02689 urate oxidase; TIGRFAM: OHCU decarboxylase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.
       0.785
Cseg_1089
TIGRFAM: urate catabolism protein; KEGG: ccs:CCNA_02688 chitooligosaccharide deacetylase; PFAM: polysaccharide deacetylase.
     
 0.775
Cseg_1091
PFAM: aminotransferase class V; KEGG: ccs:CCNA_02687 serine-pyruvate aminotransferase.
       0.483
Cseg_1092
TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: ccs:CCNA_02686 N-carbamoyl-L-amino acid hydrolase; PFAM: peptidase M20.
       0.483
Cseg_3557
PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_00859 acetyltransferase, GNAT family.
  
     0.423
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.