STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1173PFAM: protein of unknown function DUF885; KEGG: ccs:CCNA_01139 conserved cytosolic protein. (607 aa)    
Predicted Functional Partners:
Cseg_3293
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor.
  
     0.542
Cseg_1483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c1449 TonB-dependent receptor.
  
     0.535
Cseg_1172
KEGG: ccs:CCNA_01138 hypothetical protein.
       0.520
Cseg_3483
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sal:Sala_1228 TonB-dependent receptor.
  
     0.516
Cseg_2094
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01695 TonB-dependent outer membrane receptor.
  
     0.510
Cseg_1145
PFAM: peptidase M28; KEGG: cak:Caul_3661 peptidase M28.
 
     0.486
Cseg_0853
PFAM: peptidase M28; KEGG: cak:Caul_0655 peptidase M28.
 
     0.475
Cseg_2908
Methyltransferase; KEGG: ccs:CCNA_02340 methyltransferase.
  
    0.470
Cseg_2360
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_5189 TonB-dependent receptor.
  
     0.463
Cseg_0112
PFAM: amidohydrolase; WD40 domain protein beta Propeller; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: ccs:CCNA_00115 TolB protein.
 
     0.449
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.