STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1229KEGG: rpe:RPE_3044 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Cseg_1228
Transcriptional regulator, CadC; KEGG: pzu:PHZ_c1091 putative transcriptional regulator; manually curated; PFAM: transcriptional regulator domain protein.
       0.526
Cseg_1230
PFAM: amine oxidase; KEGG: ccs:CCNA_01157 protoporphyrinogen oxidase.
       0.513
Cseg_0583
KEGG: aba:Acid345_4431 PEGA domain-containing protein.
  
     0.441
Cseg_3146
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01196 iron-regulated outer membrane virulence protein.
  
     0.416
Cseg_1227
Hypothetical protein; KEGG: pzu:PHZ_c0474 putative outer membrane lipoprotein SlyB precursor.
       0.400
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.