STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cseg_1313PFAM: Peptidase C13, legumain asparaginyl peptidase; KEGG: ccs:CCNA_02189 peptidase, C13 family. (256 aa)    
Predicted Functional Partners:
Cseg_1314
PFAM: thioesterase superfamily protein; KEGG: ccs:CCNA_02188 cytosolic protein.
 
     0.791
Cseg_1315
PFAM: protein of unknown function DUF1321; KEGG: ccs:CCNA_02187 hypothetical protein.
       0.749
Cseg_1843
PFAM: peptidase M56 BlaR1; Ankyrin; KEGG: ccs:CCNA_01711 transcriptional regulator.
   
 0.694
Cseg_1312
PFAM: beta-lactamase; KEGG: ccs:CCNA_02190 penicillin-binding protein.
 
     0.629
Cseg_1546
Manually curated; KEGG: ccs:CCNA_01552 polar localization protein TipN.
 
   0.547
Cseg_1353
KEGG: ccs:CCNA_02156 hypothetical protein.
  
     0.539
Cseg_4042
PFAM: diacylglycerol kinase catalytic region; KEGG: ccs:CCNA_03670 diacylglycerol kinase catalytic region.
  
     0.517
Cseg_3618
Serralysin; PFAM: Peptidase M10 serralysin; peptidase M10A and M12B matrixin and adamalysin; Hemolysin-type calcium-binding region; KEGG: ccs:CCNA_00783 secreted protease precursor SapA; SMART: peptidase metallopeptidase.
  
     0.499
Cseg_4061
PFAM: aldo/keto reductase; KEGG: ccs:CCNA_03691 IolS protein.
  
 
 
 0.497
Cseg_3369
KEGG: ccs:CCNA_00965 chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein.
  
 
 
 0.491
Your Current Organism:
Caulobacter segnis
NCBI taxonomy Id: 509190
Other names: C. segnis ATCC 21756, Caulobacter segnis ATCC 21756, Caulobacter segnis DSM 7131, Caulobacter segnis IFO 13240, Caulobacter segnis str. ATCC 21756, Caulobacter segnis strain ATCC 21756
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.